Publications 2024

‘The long and short of it: benchmarking viromics using Illumina, Nanoport and PacBio sequencing technologies’
Ryan Cook, Nathan Brown, Branko Rihtman, Slawomir Michniewski, Tamsin Redgwell, Martha Clokie, Dov J. Stekel, Yin Chen, David J. Scanlan, Jon L. Hobman, Andrew Nelson, Michael A. Jones, Darren Smith, Andrew Millard.
Microbial Genomics (February 2024) 

‘Global genomic epidemiology of blaGES-5 carbapenemase-associated integrons’
William Matlock, Liam P. Shaw, Nicole Stoesser
bioRxiv preprint (February 2024) https://doi.org/10.1101/2024.02.09.579496

‘Integrated analysis of patient networks and plasmid genomes reveals a regional, multi-species outbreak carbapenemase-producing Enterobacterales carrying both blaIMP and mcr-9 genes ‘
Yu Wan, Ashleigh C Myall, Adhiratha Boonyasiri, Frances Bolt, Alice Ledda, Siddharth Mookerjee, Andrea Y Weisse, Mario Getino, Jane F Turton, Hala Abbas, Ruta Prakapaite, Akshay Sabnis, Alireza Abdolrasouli, Kenny Malpartida-Cardenas, Luca Miglietta, Hugo Donaldson, Mark Gilchrist, Katie L Hopkins, Matthew J Ellington, Jonathan A Otter, Gerald Larrouy-Maumus, Andrew M , Jesus Rodigruez-Manzano, Xavier Didelot, Mauricio Barahona, Alison H Holmes, Elita Jauneikaite, Frances Davies
The Journal of Infectious Diseases (January 2024) https://doi.org/10.1093/infdis/jiae019